Results for "Git"

Bio-Scripts

  • Installing Platypus on Ubuntu !

    (py27) ➜ Tools git:(master) ✗ git clone https://github.com/andyrimmer/Platypus.git Cloning...ubuntu1) ... ➜ htslib-1.9 git:(master) ✗ make install zsh:...ldirs] Error 1 ➜ htslib-1.9 git:(master) ✗ sudo make install...

    2047 days ago

  • Sync github repo

    http://stackoverflow.com/questions/6373277/git-sync-local-repo-with-remote-one This makes y...the remote and branch that you want to synchronize with. git fetch origin git reset --hard origin/master git clean -f -d...

    2010 days ago

  • Map the long reads

    Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam

    1753 days ago

  • Install NPM !

    ...ream node-fstream-ignore node-github-url-from-git node-glob node-graceful-fs no...ic/universe amd64 node-hosted-git-info all 2.5.0-1 [6,756 B] G...tu bionic/universe amd64 node-github-url-from-git all 1.4.0-1 [...ously unselected package node-github-url-from-git. Preparing t...

    1581 days ago

  • Install Zef for Raku !

    jit@jit-HP-Pro-3335-MT:~/Downloads$ git clone https://github.com/ugexe/zef.git Cloning into 'ze...ndex ===> Updating cpan mirror: https://raw.githubusercontent.com/ugexe/Perl6....json ===> Updated cpan mirror: https://raw.githubusercontent.com/ugexe/Perl6...

    1579 days ago

  • Installing docker for Bioinformatics on Ubuntu !

    ...19.03.8 API version: 1.40 Go version: go1.12.17 Git commit: afacb8b7f0 B...sion: 1.40 (minimum version 1.12) Go version: go1.12.17 Git commit: afacb8b7f0 B...

    1541 days ago

  • Basic docker commands !

    ...2cbe1 Step 5/12 : RUN apt-get update --yes && apt-get install --yes git ---> Using cache ---> 097...License: Creative Commons Licence Bug-reports and requests to: https://github.com/jnarayan81/autoConTAMP...

    1537 days ago

  • Setting up autoConTAMPR !

    ..."Jitendra Narayan" ---> Using cache ---> c0e65f263890 Step 5/16 : RUN apt-get clean && apt-get update --yes && apt-get install --yes git && apt-get install -y wge...

    1470 days ago

  • Create random 10000 SNPs in genome !

    (base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa -snp_count 10000 -prefix simuSNP [Sun Jan 10 16:05:57 2021] Starting simuG .. [Sun Jan...

    1239 days ago

  • Create random 1000 INDEL in genome !

    (base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome.fa -indel_count 1000 -prefix simuINDEL [Sun Jan 10 16:14:00 2021] Starting simuG .. [Sun...

    1239 days ago