Results for "de novo assembly"
Bio-Scripts
Pack a perl program with their dependencies on Ubuntu !
...r key is released... Evaluation of genome assembly software based on long re...ar 409 days ago Evaluationgenomeassemblysoftwarelongreads TGS...have been used to produce highly accurate de novo assemblies of hundreds of microbi...1540 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PIC...1365 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1245 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda prokka Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen solve. Retr...
1244 days ago
- Use pen and paper the assemble it. If you are brave enough, you can try to assemble this set of reads: CAGATGTCCT GACCTTTTCT TAAGATCTTT TCTTTAGCCG TTTC...
1244 days ago
- (JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1244 days ago
Install assembly-stat using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1083 days ago
Tadpole is 250x faster than SPADes assembler !
...more information. Usage: Assembly: tadpole.sh in= out= Ext...h. showstats=t Print assembly statistics after writing cont...up kmer extension lookups. Assembly parameters: mincountseed=3...reads that cannot be used for assembly. This me...1005 days ago
Bash script to simulate a genome !
# Reference https://github.com/chhylp123/hifiasm/issues/33 # Use Drosophila melongaster PacBio assembly cd /genetics/elbers/test/fly...946 days ago
- (abhiENV) [abhi@hn1 output_OM824]$ conda create -n mgsc python=3.6 graphviz numpy...active environment, use # # $ conda deactivate mgsc -i [path to your assembly graph] -o [output directory n...
854 days ago
