Results for "set"
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here my $seqfile...2197 days ago
- #!/bin/bash #set the path export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/bin export PATH=$PATH:/home/urbe/Tools/augustus-3.2.3/scripts export AUGUSTUS_CONFIG_PATH=...
2194 days ago
- ....min100 /home/urbe/Tools/trinityrnaseq-Trinity-v2.6.6/trinity_out_dir/chrysalis/inchworm.K25.L25.DS.fa.min100 1>/dev/null * Running CMD: bash -c " set -o pipefail;/home/urbe/anacon...
2183 days ago
- ...ot is not set, otherwise - to individual re...dual reads Applied only with --split-spot set --skip-technical...for other than SOLiD). Quality -Q|--offset Offset to use for...
2183 days ago
Install Parrot Virtual Machine !
..........done. init::defaults - Set Configure's default values.............done. init::install - Set up installation paths...........Does your C library have setenv / unsetenv.........both....--no-gc -g --gc ms2|gms|ms|inf set GC type --gc...1593 days ago
Installing Porechop on Ubuntu !
...Porechop ➜ Porechop git:(master) python3 setup.py install running install...rimmed reads (if not set, trimmed reads will be printe...(default: 16) Barcode binning settings: Control the binning...2162 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" e...fa 03.score 04.break 05.summary -------- set -e echo "Running reapr versi....break 05.summary ----- #!/usr/bin/env bash set -e echo " test smaltmap...
2155 days ago
- ...//github-production-release-asset-2e65be.s3.amazonaws.com/27452...g github-production-release-asset-2e65be.s3.amazonaws.com (gith...Builds set of host reference k-mers...d-of-reference alignments and setting MAPQ to 0 for unmapped re...
2132 days ago
Perl script to create a consensus of nucleotide sequences !
...otif_count=0; my @words =(); my %H = ( A=>[], T=>[], C=>[], G=>[] ); s/\s//g for @mi; my ($w) = sort {$b $a} map {length} @mi; # set w to the length of the longes...2088 days ago
- ...gy.c:304:7: warning: variable ‘leftSingle’ set but not used [-Wunused-but-set-variable] int leftSingle;...’: nsStar.c:30:12: warning: variable ‘pf’ set but not used [-Wunused-but-se...exes.c:110:16: warning: variable ‘tmpPerm’ set but not used [-Wunused-but-se...
2083 days ago
