Results for "NT"
Bio-Scripts
...-------------- CMD: jellyfish count -t 40 -m 25 -s 100000000 --c...fish.K25.min2.kmers.fa.histo mer_counts.jf CMD finished (6 seconds)...---- * Running CMD: jellyfish count -t 40 -m 25 -s 100000000 --c...rvesting all assembled transcripts into a single multi-fasta file......2179 days ago
- ...Split spots into individual reads Full Sp...-R|--read-filter Split into files by READ_FILTER value...joined into single stream --gzip...group is not printed. Empty value is empty...
2178 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2177 days ago
- ...ference based (if --reference is given) Documentation at http://hibberdlab.com...fault: 8) --merge-assemblies= Merge best contigs from multiple assemblies i...ity [ INFO] 2018-07-13 14:54:21 : Calculating contig metrics... [ INFO] 2018-07...
2175 days ago
Installing Porechop on Ubuntu !
...rrwick/Porechop.git Cloning into 'Porechop'... remote: Counting objects: 1579, done. remo...-D NDEBUG -Wall -Wextra -pedantic -mtune=native -c -o porecho...ependency_links.txt writing entry points to porechop.egg-info...le and stderr if reads are printed...2158 days ago
Perl script to find palindromic pattern !
...A C G T ] } = qw[ T G C A ]; my $in = do{ local $/; }; chomp $in; print $in; for my $p1 ( 1 .. lengt...my $st=$p1-$pals; my $sLen=($pals+1)*2; my $ed=($st+$sLen)-1; print "$st\t$ed\t$sLen\t$val\n";...2151 days ago
- ...xtomics/nextsv.git Cloning into 'nextsv'... remote: Counting objects: 369, done. remot...BamTools-static.dir/BamAlignment.cpp.o [ 18%] Building CXX ob...between signed and unsigned integer expressions [-Wsign-compa...ng: format ‘%i’ expects argument of type ‘int’, but argument 3...
2150 days ago
Install Python locally on shared Linux server !
...default it is in the /usr/local/ and we don't want that so we use our own #customized directory. #Here comes another important step. By the default, if we t...ailable: which pip #It should show a path pointing to your local directory: ~...2150 days ago
Perl script to extract sequence by Ids from multifasta file !
...A header if (exists($ids{$id})) { $seq =~ s/^>*.+\n//; # remove FASTA header $seq =~ s/\n//g; # remove endlines print ">$id\n$seq\n"; } } cl...2148 days ago
Installing Busco version 4.0.6
...(repodata.json): done Solving environment: done ## Package Plan ## environment location: /home/jit/anaconda3...B bioconda perl-cpan-meta-requirements-2.140| pl526_0...64::perl-carp-1.38-pl526_3 perl-constant bioconda/linux-64::perl-...1505 days ago
