1260 days ago
Set up WGD environment using conda !
....1.25-cp37-cp37m-manylinux1_x86_64.whl (154 kB) |██████...ly-9.1-py2.py3-none-any.whl (86 kB) Collecting Jinja2>=2.7...cached PyYAML-5.3.1.tar.gz (269 kB) Collecting scipy>=1.2...0.24.1 pillow-8.1.0 plumbum-1.6.9 progressbar2-3.53.1 pyparsi...1260 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...E -- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi...ed from /usr/include/stdio.h:862:0, from /u...tr_lists_030210_201/scaffold_1696.lst -- Installing: /home/u...tr_lists_030210_201/scaffold_167.lst -- Installing: /home/ur...1260 days ago
Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61257 days ago
Steps to install Conda on Linux !
...da.html#linux-installers ) Anaconda installer for Linux. ( https://www.anaconda.com/products/individual ) $ chmod 777 Anaconda3-2020.11-Linux-x86_64.sh $ ./Anaconda3-2020.11-...1239 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...equired: gir1.2-vte-2.91 libido3-0.1-0 libllvm6.0 libwayland-egl1-mesa Use '...et 351 kB of archives. After this operation, 1,267 kB of additional disk space...d.) Preparing to unpack .../dos2unix_7.3.4-3_amd64.deb ... Unpacking dos2unix...1233 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...tom' instead of './../atom-amd64.deb' The following packages...hives. After this operation, 698 MB of additional disk space...me/bioqueen/Downloads/atom-amd64.deb atom amd64 1.54.0 [126 M...triggers for mime-support (3.60ubuntu1) ... Processing trig...1232 days ago
Parse the NCBI taxonomy database with Perl !
...am = $dbh->get_taxon(-name => $sps); $nam = $dbh->get_taxon(-taxonid => 9606); if(!$nam) { print "Try aga...nt $_->scientific_name; print "\n";} my $decision =recheck_class (1974465, "metazoa"); print $decisio...1229 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...aDB #https://www.arb-silva.de/no_cache/download/archive/release_138_1/Exports/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SSU: Small subunit (16S/18S ribosomal RNAs) my $s...1217 days ago
Install htop in elementary/Ubuntu OS !
...equired: gir1.2-vte-2.91 libido3-0.1-0 libllvm6.0 libwayland-egl1-mesa Use '...tp://in.archive.ubuntu.com/ubuntu bionic/main amd64 htop amd64 2.1.0-3 [80.0 kB]....1) ... Processing triggers for mime-support (3.60ubuntu1) ...1209 days ago