Results for "6"
Bio-Scripts
Commandline for paired end reads simulation with BBMap !
...ads=100k length=250 mininsert=400 maxinsert=600 gaussian java -ea -Xmx162129m -cp /home/urbe/Tools/bbm...=100k, length=250, mininsert=400, maxinsert=600, gaussian] Writing refer...d length=250 reads=100000 insert size=400-600 Wrote reads_BBMAP250.fq T...1047 days ago
- ...B of additional disk space will be used. Do you want to continue? [Y/n] Y Get:1 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 libjellyfish-2.0-2 amd64 2.2.8-3build1 [60.7 kB] Get...
1038 days ago
Tadpole is 250x faster than SPADes assembler !
...1-31, multiples of 2 from 32-62, multiples of 3 from 63-93,...mode=extend extra=reads.fq k=62 Input parameters: in=...ze estimation. contigpasses=16 Build contigs with decrea...he base to an N. errormult1=16 (em1) Min ratio between...1033 days ago
- ...chored, no identities, 5 = query-anchored no identities and blunt ends, 6 = flat query-anchored, no ide...be TRUE) [File Out] Optional -M Matrix [String] default = BLOSUM62 -v Number of database se...
1007 days ago
Command line to create blast uniref database !
...acy NCBI BLAST package (no longer supported), which is available from the NCBI's FTP site: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/. wget ftp://ftp.uniprot.o...1007 days ago
Download desire version of Blast software !
...d wget it wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz #unpac...H_EXPORT=NONE export OMP_NUM_THREADS=??? module load ncbi-blast/2.6.0_x86_64999 days ago
- ...bd_2 3.0 MB conda-forge hhsuite-3.3.0 |py38pl526h6ed170a_1 26.6 MB bioco...######################################### | 100% hhsuite-3.3.0 | 26.6 MB | ####################...
999 days ago
Downloading mmseqs databases !
...m.org - Pfam-A.seed Profile - https://pfam.xfam.org - Pfam-B Profile - https://xfam.wordpress.com/2020/06/30/a-new-pfam-b-is-released...999 days ago
- ...s/bbmap/ /genetics/elbers/bbmap-38.86/randomreads.sh build=1 \ see...000 \ out=/dev/null # make 60x haploid coverage for Illumi...s/bbmap/ /genetics/elbers/bbmap-38.86/reformat.sh \ in=illumina1.f...t/fly2 /genetics/elbers/bbmap-38.86/randomreads.sh build=1 \ ow=...
985 days ago
Installing Covid19 Environment !
...########## | 100% cffi-1.14.6 | 225 KB | ######...############### | 100% tk-8.6.11 | 3.3 MB | #...00% alsa-lib-1.2.3 | 560 KB | ####################...##### | 100% _sysroot_linux-64_cu | 14 KB | ###########...980 days ago
