Results for "PA"
Bio-Scripts
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda ragout Collecting package metadata (current_repoda...will retry with next repodata source. Collecting package metadata (repodata.json)...1111 days ago
- vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1111 days ago
- ...t install r-base-core [sudo] password for vik: Reading package lists... Done Building...ubuntu bionic/main amd64 liblapack3 amd64 3.7.1-4ubuntu1 [2,11...bionic/universe amd64 r-cran-rpart amd64 4.1-13-1 [878 kB]...in auto mode Setting up liblapack3:amd64 (3.7.1-4ubuntu1) ......
1111 days ago
Install trimmomatic using Conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ co...-c bioconda trimmomatic Collecting package metadata (current_repoda...)? y Downloading and Extracting Packages certifi-2021.5.30 |...######################## | 100% Preparing transaction: done Verify...1111 days ago
Install grabseqs using conda !
vik@vik-Lenovo-ideapad-320-15ISK:~/Downloads/setu/setu$ conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1111 days ago
Bash script to check installed bioinformatics program !
allTools=(bwa mummer trimomatic) decFlag=0; for name in ${allTools[@]}; do #echo "enter your package name" # read name dpkg -s $name &> /dev/null if [ $? -ne...1103 days ago
- ...all -c bioconda megahit Collecting package metadata (current_repoda...ne Solving environment: done ## Package Plan ## environment...: - megahit The following packages will be downloaded:...2.9 MB The following NEW packages will be INSTALLED:...
1103 days ago
- ...lving environment: done ## Package Plan ## environment...28.8 MB The following NEW packages will be INSTALLED:...4-hc22bd24_0 The following packages will be SUPERSEDED by a...################# | 100% Preparing transaction: done Verify...
1103 days ago
- ...lving environment: done ## Package Plan ## environment...- odgi The following packages will be downloaded:...237.6 MB The following NEW packages will be INSTALLED:...################# | 100% Preparing transaction: done Verify...
1103 days ago
- ...ll -c bioconda seqwish Collecting package metadata (current_repoda...ne Solving environment: done ## Package Plan ## environment...: - seqwish The following packages will be downloaded:...4.6 MB The following NEW packages will be INSTALLED:...
1103 days ago
