Onliner to split the multifasta to singlefasta files !
#Split the multifasta to singlefasta # Multi fasta #Single fasta awk '$0 ~ "^>" { match($1, /^>([^:]+)/, id); filename=id[1]} {print >> filename".fa"}' sequence.fasta1464 days ago
Perl One-Liner to print only non-uppercase letters
#Go through file and only print words that do not have any uppercase letters. perl -ne 'print unless m/[A-Z]/' dna.fa > dnaOnlyLowercase.fa #To lowercase everything perl -pne 'tr/[A-Z]/[a-z]/' dnaUpperCase.fa >dnawithoutuppercase.fa;1447 days ago
1404 days ago
Install SibeliaZ in your Linux cluster !
(jitenv) jitendra@Bathymodiolus:~$ conda insta...one Solving environment: failed with initial frozen solve. Retrying with flexible solve. Solving env...environment location: /home/jitendra/.conda/envs/jitenv...e Executing transaction: done (jitenv) jitendra@Bathymodiolus:~$...1296 days ago
1281 days ago
1281 days ago
1280 days ago
Install trimmomatic using conda !
(JitMetaENV) ➜ fastQC_out conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1280 days ago
1280 days ago
1280 days ago