Results for "PA"
Bio-Scripts
#Create a conda environment. #Install a Python package in the terminal using conda. $ conda create -n...arth-analytics-python $ conda env update -f environment.yml #Adding a Package to your YAML File nam...1018 days ago
Commands to Remove White Space In Text Or String Using Awk And Sed In Linux
...'{ gsub(/ /,""); print }' Return: ATGGTVAGTGACCTAGAGTGATGAGGGRTTT echo "$text" | sed 's/^ //g' echo "$text" | sed 's/ \$//g' #Multiple space cat /tmp/test.txt | sed 's...1013 days ago
- ...fault = 10.0 -m alignment view options: 0 = pairwise, 1 = query-anchored sh...default = 7.0 -P 0 for multiple hits 1-pass, 1 for single hit 1-pass, 2...F -h e-value threshold for inclusion in multipass model [Real] default =...
1007 days ago
Command line to create blast uniref database !
...stribution does not include 'blastpgp', it has been replaced by the 'psiblast' program. The 'blastpgp' program is available in the legacy NCBI BLAST package (no longer supported), w...1007 days ago
Inreractive SCP / File transfer !
...lue is not null, and if null it will reask user to enter Destination Path while [ x$destpath = "x" ]; do #next line pri...ame ... " #next like copy pre-entered file(s) or dir to destination path on destination server scp...1007 days ago
- ...SERVER=$OPTARG ;; p) PASSWD=$OPTARG ;;...;; esac done if [[ -z $TEST ]] || [[ -z $SERVER ]] || [[ -z $PASSWD ]] then usage...
1006 days ago
Get the Linux system information !
...\ "1" "Display System Information" \ "2" "Display Disk Space" \ "3" "Display Home Space Utilization" \ 2>&1 1>...ult=$(du -sh /home/* 2> /dev/null) display_result "Home Space Utilization (All Users)"...1005 days ago
Download desire version of Blast software !
...v/blast/executables/blast+/2.6.0/ncbi-blast-2.6.0+-x64-linux.tar.gz #unpacking blast tar -zxvf ncbi-blast-2.6.0+-x64-linux.tar.gz #Slurm template #!/bin/bash #SBATCH --partition=longjobs #SBATCH --no...999 days ago
- ...lving environment: done ## Package Plan ## environment...- hhsuite The following packages will be downloaded:...30.0 MB The following NEW packages will be INSTALLED:...################## | 100% Preparing transaction: done Verify...
999 days ago
Downloading mmseqs databases !
...Nucleotide yes https://github.com/lskatz/Kalamari #For example, run the following to download and setup the Swiss-Prot at the output path outpath/swissprot: mmseqs databa...999 days ago
