Results for "AA"
Bio-Scripts
...e/MyPassport/rnaseq_boris/AIG_AAAOSW_8_2_C1CBGACXX.IND11_norib...e/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_norib...e/MyPassport/rnaseq_boris/AIG_AAAOSW_8_1_C1CBGACXX.IND11_norib...silico_read_normalization/AIG_AAAOSW_8_1_C1CBGACXX.IND11_norib...2179 days ago
- ...h5py) (1.11.0) ➜ nextsv git:(master) pip install PyIntervalTree Collecting PyIntervalTree Downloading https://files.pythonhosted.org/packages/aa/53/dbdb521c8e36301108114878ff...
2150 days ago
- ...llumina sequencing data into an unmapped SAM or BAM file. MarkIlluminaAdapters (Picard)...Picard) Generates a BAM index ".bai" file. BwaAndMarkDuplicatesPipelineSpark...
2127 days ago
Perl script to reverse complement a DNA sequence !
#!/usr/bin/perl -w $DNA = 'ACGGGAGGACGGGAAAATTACTACGGCATTAGC'; print "Here is the starting DNA:\n\n"; print "$DNA\n\n"; $revcom = reverse $DNA; $revcom =~ s/A/T/g; $r...2094 days ago
Perl script to create a consensus of nucleotide sequences !
use strict; use warnings; my @instances = qw ( AAAAA ATCGA ATAAA ); my @instances2 = qw ( AAAAA AACGA ATAAA AGAAA AGAAA); print consensus(@i...# ATAAA print consensus(@instances2),"\n"; # ATAAA exit; sub consensus{ m...2083 days ago
- ...-Amz-Signature=2ec8006aeb069dae00035e224e9c2af7b980de816d82672db24e2945fa8aaaf1&X-Amz-SignedHeaders=host&a...-Amz-Signature=2ec8006aeb069dae00035e224e9c2af7b980de816d82672db24e2945fa8aaaf1&X-Amz-SignedHeaders=host&a...
2071 days ago
Installing Platypus on Ubuntu !
...240 KB conda-forge platypus-variant-0.8.1.1 | py27hdbffeaa_3 10.1 MB bioconda...8.0-h5b517e9_2 conda-forge platypus-variant: 0.8.1.1-py27hdbffeaa_3 bioconda The followin...2070 days ago
Finding Kmers from fasta sequence file
Save it in sample.fa >test TAATGCCATGGGATGTT jellyfish count -m 3 -s 100000 sample.fa -o sample.jf jellyfish dump -c sample.jf It return TGT 1 GAT 1 GGG 1 GGA 1 CAT 1 TGC 1 TAA 1 GCC 1 CCA 1 GTT 1 TGG 1 ATG 3 AAT 12023 days ago
Palindrome Simulation commands !
...6 mutate.sh in=mutant15CH101.fasta out=mutant153CH101.fasta id=97 3317 history > allCommands 3318 cat ch101_read33155_template_pass_FAH31515.faa mutant3CH101.fasta mutant15CH...1787 days ago
- use v6; my $default-input = "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC"; sub MAIN($input = $default-input) { "{.map({ +$input.comb(/$_/) })}".say; } #I love perl v6
1611 days ago
