Results for "BASE"
Bio-Scripts
Perl script to create a consensus of nucleotide sequences !
...$w) = sort {$b $a} map {length} @mi; # set w to the length of the longest element foreach my $j ( 0 .. $w-1 ){ # Initialize the base counts. my %h = ( a=...2080 days ago
- ...: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result] fgets(line,MAXLINE,fp); // This is the first base-pair and pair prob ^~~~...
2075 days ago
Setting up falconUnzip conda environments for genome assembly !
...nim-falcon: 0.0.0-0 bioconda numpy: 1.15.0-py27h1b885b7_0 numpy-base: 1.15.0-py27h3df...2038 days ago
Bash script to alignment of short reads against reference genome !
...SRR1770413_1.fastq.gz SRR1770413_2.fastq.gz --- this just specifies the base reference file name (bwa find...413.bam --- this marks reads which appear to be redundant PCR duplicates based on their read mapping positi...1608 days ago
Bash commandline to install Anaconda !
.... installing: fontconfig-2.13.0-h9420a91_0 ... installing: gst-plugins-base-1.14.0-hbbd80ab_1 ... instal...installing: msgpack-python-0.6.1-py37hfd86e86_1 ... installing: numpy-base-1.16.2-py37hde5b4d6_0 ... in...1604 days ago
Bash command to install Miniconda !
(base) [wsu29@bladeamd-2 tmp]$ wget https://repo.anaconda.com/miniconda/Miniconda3-la....06 MB/s) - `Miniconda3-latest-Linux-x86_64.sh' saved [71785000/71785000] (base) [wsu29@bladeamd-2 tmp]$ sh M...1604 days ago
Bash command to install bwa, samtools, picard !
(base) [wsu29@bladeamd-2 tmp]$ conda install bwa Collect...| 0 14.7 MB bioconda r-base-3.6.1 | h...pkgs/main/linux-64::pixman-0.38.0-h7b6447c_0 r-base pkgs/r/linux-64::...1604 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...-fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack-protector-str...ic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack...ic -fpic -g -O2 -fdebug-prefix-map=/build/r-base-AitvI6/r-base-3.4.4=. -fstack...1598 days ago
- (my_GATK) [wsu29@bladeamd-2 testGATK]$ conda update -n base -c defaults conda Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan...
1595 days ago
- (py36) [wsu29@bladeamd-2 lofreq]$ lsb_release -a LSB Version: :base-4.0-amd64:base-4.0-noarch:core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch Distributor ID: CentOS Description: CentOS release 6.7 (Final) Release: 6.7 Codename: Final
1587 days ago
