Command to create conda environment !
# using pip pip install -r requirements.txt # using Conda conda create --name --file requirements.txt #Using yaml conda env create -f environment.yml #Listing env conda env list #Create env with python36 conda create -n myenv python=3.61264 days ago
Steps to install Conda on Linux !
...conda environment available conda info --envs # Create new environment named as `envname` conda create --name envname # Remove environment and its dependencies conda remove -...1246 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...: dos2unix 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 351 kB of archives. After this operation, 1,267 kB of additional disk space will be used....1241 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...' to remove them. The following additional packages will be install...After this operation, 698 MB of additional disk space will be used....ting config file /etc/gconf/2/path with new version Setting up libg...t. #Atom is essentially a text editor that you can use for coding...1240 days ago
Parse the NCBI taxonomy database with Perl !
...check #parseTax('homo_sapiens', 'metazoa'); #exit; #my $nam = $dbh->get_taxon(...taxonid => 9606); if(!$nam) { print "Try again with correct scientific name\n";...lass (1974465, "metazoa"); print $decision; #It return 1 of matches otherwise...1236 days ago
1227 days ago
Perl script to run awk inside perl
...le $ARGV[0] =~ /^([A-Za-z_0-9]+=)(.*)/ && shift; # process any FOO=bar switches $, = ' '; # set output f...ecord separator while () { chomp; # strip record separator @Fld = split(' ', $_, -1); if ($awk) { $...1227 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...t qq{\n Module $_ NOT OK!\n }; #exit 1; } # end 'if'...archive/release_138_1/Exports/ #LSU: Large subunit (23S/28S ribosomal RNAs) #SS...ub/taxonomy/taxdump.tar.gz"); die "Couldn't get it!" unless defined $content;...1224 days ago
1222 days ago
Perl script to check modules installed !
...or ( @import_modules ) { eval{ $inst->validate($_) }; if($@) { print qq{\n Module $_ NOT OK!\n }; #exit 1; } # end 'if'...1219 days ago