Results for "PE"
Bio-Scripts
(JitMetaENV) ➜ assembly conda install -c bioconda bwa Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1273 days ago
Install asciigenome using conda !
(JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.1273 days ago
Download minikraken database !
...4.tgz % Total % Received % Xferd Average Speed Time Time Time Cu...Dload Upload Total Spent Left Speed 100 5661M...ken2_v2_8GB_201904_UPDATE/hash.k2d #Check for pe reads #kraken2 --use-names -...1272 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?
1272 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1272 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq SGDref.R64-2-1.dups.fa...g simuG .. [Sun Jan 10 16:05:57 2021] Check specified options .. Running sim...eed: 811014067 The option snp_count has been specified: snp_count = 10000 The...1268 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuSNP.simseq.genome....g simuG .. [Sun Jan 10 16:14:00 2021] Check specified options .. Running sim...: 1678440514 The option indel_count has been specified: indel_count = 1000 Th...1269 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINDEL...[Sun Jan 10 16:24:20 2021] Check specified options .. Running sim...3 The option cnv_count has been specified: cnv_count = 100 The o...The option cnv_min_size has been specified: cnv_min_size = 100 Th...1268 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuCNV.simseq.genome....g simuG .. [Sun Jan 10 16:30:40 2021] Check specified options .. Running sim...39103429 The option inversion_count has been specified: inversion_count = 5 T...1268 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refseq simuINV.simseq.genome....g simuG .. [Sun Jan 10 17:12:58 2021] Check specified options .. Running sim...5826 The option translocation_count has been specified: translocation_count =...1268 days ago
