Results for "B"
Bio-Scripts
Install asciigenome using conda !
(JitMetaENV) ➜ viruses conda install -c bioconda asciigenome Collecting package metadata (current_repodata.json): / done Solving environment: done ==> WARNING: A newer version of conda exists.1273 days ago
Download minikraken database !
...taENV) ➜ day3 curl -O ftp://ftp.ccb.jhu.edu/pub/data/kraken2_dbs/old/minikrak...aENV) ➜ day3 ls minikraken2_v2_8GB_201904.tgz (JitMetaENV) ➜ d...d krakenDB (JitMetaENV) ➜ krakenDB ls (JitMetaENV) ➜ krakenDB...kraken2 --use-names --threads 4 --db minikraken2_v2_8GB_201904_UPD...1272 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda krona Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. 2020.12.5-py36h5fab9bb_1 Proceed ([y]/n)?
1272 days ago
- (JitMetaENV) ➜ day3 conda install -c bioconda maxbin2 Collecting package metadata (current_repodata.json): done...ving environment: failed with initial frozen solve. Retrying with flexible solve. Solving environment...
1272 days ago
Create random 10000 SNPs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../...: 811014067 The option snp_count has been specified: snp_count = 10000 The option titv_ratio has been specified: titv_ratio = 0....2simseq.map.txt Generating reference-based vcf file for genomic vari...1269 days ago
Create random 1000 INDEL in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../...678440514 The option indel_count has been specified: indel_count = 1000 The option ins_del_ratio has been specified: ins_del_ratio =...2simseq.map.txt Generating reference-based vcf file for genomic vari...1269 days ago
Create random 1000 CNVs in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../...: 678641233 The option cnv_count has been specified: cnv_count = 100...duplication_tandem_dispersed_ratio has been specified: duplication_tan..._dispersed_ratio = 1 > cnv_max_copy_number = 10 > cnv_min_size = 100...1269 days ago
Create random 5 inversions in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../...03429 The option inversion_count has been specified: inversion_count...= 5 The option inversion_min_size has been specified: inversion_min_s...2simseq.map.txt Generating reference-based vcf file for genomic vari...1269 days ago
Create random 2 translocations in genome !
(base) ➜ dupStudy git:(master) ✗ perl ../simuG.pl -refs...eed: 1925195826 The option translocation_count has been specified: translocation_c...10 17:12:58 2021] Introducing random Translocations based on the following paramete...1269 days ago
- ...t already satisfied: matplotlib>=3.0.2 in /home/urbe/.local/l...sfied: pillow>=4.0 in /home/urbe/anaconda3/envs/JitMetaENV/li...1.2-py2.py3-none-any.whl (82 kB) |█████████████████████...l-2.1.0-py3-none-any.whl (12 kB) Building wheels for collect...
1265 days ago
