Steps to install Conda on Linux !
...x-x86_64.sh #Follow the yes/no flags and finish till the end #Check the installation $ conda -V A few other frequently used commands # list all the conda environment available conda info --envs...1241 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...upgraded. Need to get 351 kB of archives. After this operation, 1,267 kB of additional disk space will be used. Get:1 http://in.archive.ubuntu.com/ubuntu bionic/universe amd64 dos2un...1235 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...additional disk space will be used. Do you want to continue? [Y/n] Y Get:1 http://in...to unpack .../gconf-service-backend_3.2.6-4ubuntu1_amd64.deb ... Unpacking gc...ding. But did you know that you can turn Atom into a full-fledged IDE (integrat...1234 days ago
Parse the NCBI taxonomy database with Perl !
...$sps); $nam = $dbh->get_taxon(-taxonid => 9606); if(!$nam) { print "Try again with correct scientific name\n"; exit;} print "E...$nam->ancestor; my $ancestor_taxon = $dbh->ancestor($nam); #print $ancestor_taxon; use Bio::...1231 days ago
Perl script to get all the descendent in a tree !
...-namesfile=> "taxdump/names.dmp"); my $taxon = $dbh->get_taxon(-taxonid => 10190); my @taxa = $dbh->get_all_Descendents($taxon); foreach (@taxa) {print $_->id; print "\n";}...1223 days ago
1222 days ago
Perl script to run awk inside perl
...rator while () { chomp; # strip record separator @Fld = split(' ', $_, -1); if ($awk) { $Fld[(1)-1] = ''; $Fld[(2)-1] = ''; print join($,,@Fld); } print join($,,@Fld) if $f1 . . $txt...1222 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...alidate($_) }; if($@) { print qq{\n Module $_ NOT OK!\n }...exit 1; } # end 'if' else { print "\n Module $_ OK!\n";} }...store($busco_url_LSU, $busco_LSU_fileName); #print $busco_LSU_code; my $busco...1219 days ago
1217 days ago
Perl script to check modules installed !
...eval{ $inst->validate($_) }; if($@) { print qq{\n Module $_ NOT OK!\n }; #exit 1; } # end 'if' else { print "\n Module $_ OK!\n";} }...1214 days ago