Results for "B"
Bio-Scripts
...action and more. https://github.com/gpertea/gffread (jitENV) jitendra@Bathymodiolus:~$ conda install...The following packages will be downloaded: package...hdf63c60_0 5.1 MB libstdcxx-ng-9.1.0...s zlib-1.2.11 | 103 KB | ########################...1261 days ago
Set up WGD environment using conda !
#Wgd cannot be installed directly with bioconda at present, so it is slightly troublesome to install, because it...5.0-py2.py3-none-any.whl (45 kB) Collecting ete3>=3.1 Usi...5.1-py2.py3-none-any.whl (13 kB) Collecting pytz>=2011k D..., pandas, packaging, matplotlib, Jinja2, humanfriendly, sklea...1261 days ago
Install and set up i-adhore for synteny and wgd analysis ! -- step by step --
...z from https://wdiceryfd4rjn74bjhhtz2k5di--bioinformatics-psb-ugent-be.tra...ore.dir/Cluster.cpp.o [ 52%] Building CXX object src/CMakeFi...8.lst -- Installing: /home/urbe/anaconda3/envs/wgd/./testset...1.lst -- Installing: /home/urbe/anaconda3/envs/wgd/./testset...1261 days ago
Steps to install Conda on Linux !
...flags and finish till the end #Check the installation $ conda -V A few other frequently used commands # list all the conda environment available conda info --envs # Cre...1240 days ago
Converting from Windows-style to UNIX-style line endings with dos2unix
...deapad-320-15ISK:~/Downloads/abc/bin$ sudo apt install dos2unix [sudo] password for bioqueen: Reading package...equired: gir1.2-vte-2.91 libido3-0.1-0 libllvm6.0 libwayla...t upgraded. Need to get 351 kB of archives. After this oper...Processing triggers for man-db (2.8.3-2ubuntu0.1) ......1234 days ago
Install ATOM editor on Elemantory OS / Ubuntu
#Download ATOM deb file from https://atom.io/ https://atom.io/download/deb (base) bioqueen@bioqueen-Lenovo-ideapad-320-15I...2-common_3.2.6-4ubuntu1_all.deb ... Unpacking gconf2-common...ls, open, outdated, prune, publish, rebuild, rebuild-mo...1233 days ago
Parse the NCBI taxonomy database with Perl !
...="human"; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-so...azoa'); #exit; #my $nam = $dbh->get_taxon(-name => $sps);...$nam->id, "\n"; # 9606 #$abc = $names{$speciesId}; my...assNode may leads to error sub recheck_class { my ($lineage...1230 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source...-namesfile=> "taxdump/names.dmp"); my $taxon = $dbh->get_taxon(-taxonid => 10190...1222 days ago
- ...UT, \*CHLD_IN, 'command arg1 arg2'); It runs a process for both reading and writing and creates a pipe to both STDIN and STDOUT. It can b...my $out, my $in, 'command', 'arg1', 'arg2'); You can read about it more in the documentati...
1221 days ago
Perl script to run awk inside perl
#!/usr/local/bin/perl eval 'exec /usr/local/bin/perl -S $0 ${1+"$@"}' if $running_under_som...rocessing on NIH machines. # (remove #! line above if indigestible) eval '...Za-z_0-9]+=)(.*)/ && shift; # process any FOO=bar switches $, = ' '; # set o...1221 days ago
