Tadpole is 250x faster than SPADes assembler !
lege@jit-Lenovo-ideapad-320-15ISK:~/Downloads/MyTools/Vir$ tadpole.sh Written by Bri...unt below this will have its quality reduced. markdeltaonly=t...eads containing errors. markquali...1003 days ago
Run multiple bash command in screen !
#login to screen screen -r 123 #bash.sh srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash.sh #Run and check the status in screen contol +A +D989 days ago
Inreractive SCP / File transfer !
#!/bin/bash #next line prints hearer of scri...s) / Directory using scp" #next line check if entered value is not null,...finishes while loop done #next line check if entered value is not null,...filename filename='null' #next line check if entered value is null, and...977 days ago
Perl onliner to check the ids in two files !
perl -lane 'BEGIN{open(A,"ids2.txt"); while(){chomp; $k{$_}++}} if (defined($k{$F[0]})) {print "$_\t$F[0]\t1"} else {print "$_\tNA\t0"}; ' ids1.txt > aaa.xls954 days ago
947 days ago
Install Install Gffcompare on Ubuntu / Linux
#Gffcompare is a program that is used to perform operations on general feature format...e/bin/gffcompare-0.9.8.Linux_x86_64/gffcompare ~/workspace/bin/gffcompare # check Installation ~/workspace/bin...851 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data446 days ago
Raku script to find SSRs in fastq file !
sub find-ssrs(Str $sequence) { my @ssrs; for 2..$sequence.chars -> $min-repeats { for $sequence...ce = $fh.readline.chomp; # Skipping the next two lines (comment and quali...139 days ago
Raku script to find overlaps between two bed files !
#!/usr/bin/env raku # Check if the correct number of arguments are provided...elds1[1]; my $end1 = @fields1[2]; # Check for overlaps with intervals i...; my $end2 = @fields2[2]; # Check for chromosome match and over...122 days ago
Perl script to find overlaps between two bed files !
#!/usr/bin/perl use strict; use warnings; # Check if the correct number of arguments are provided if (@ARGV != 2) { die "Usage: $0 file1.bed file2.bed\n"; } # Read the contents of the two BED files my $file1 = shift @ARGV; my $file2 = shift @ARGV; open my $fh1, '122 days ago