Results for "BASE"
Bio-Scripts
Trim the reads in loop using Trimmomatic !
for infile in *_1.fastq.gz do base=$(basename ${infile} _1.fastq.gz) trimmomatic PE ${infile} ${base}_2.fastq.gz \ ${base}_1.trim.fastq.gz ${base}_1un.trim.fastq.gz \ ${base}_2.trim.fastq.gz ${base}_2un....1008 days ago
- (base) [abhi@hn1 bin]$ conda install -c conda-forge -c bioconda hhsuite Collecting package metadata (current_repodata.json): done Solving environment: done ## Pac...
996 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:...##################### | 100% libwebp-base-1.2.0 | 815 KB | #######...########################### | 100% r-base-3.6.3 | 23.4 MB | #...d to manually update the taxonomy databases before Krona can generate ta...977 days ago
Run Pango on your multifasta file !
...-lineages.org/resources/pangolin/usage.html (base) [jnarayan@hn1 FASTA]$ conda...vs/pangolin/lib/python3.8/site-packages/sklearn/base.py:324: UserWarning: Trying t...vs/pangolin/lib/python3.8/site-packages/sklearn/base.py:438: UserWarning: X has fe...941 days ago
- Lenovo-ideapad-320-15ISK:~/VANSH$ conda update -n base conda Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environm...
916 days ago
Installing SEVA environment in Conda !
(base) [jnarayan@hn1 SEVA_codes_and_files]$ conda env create -f SEVA.yaml Collectin...#################################################################### | 100% r-base64enc-0.1_3 | 44 KB | #...891 days ago
- ...pkgs/main/linux-64::libtiff-4.2.0-h85742a9_0 libtool pkgs/main/linux-64::libtool-2.4.6-h7b6447c_1005 libwebp-base pkgs/main/linux-64::libwebp-base-1.2.0-h27cfd23_0 libxcb...
878 days ago
- ...et up the R we will be using, except the installation location. ## download and extract cd ~/workspace/bin wget https://cran.r-project.org/src/base/R-3/R-3.5.1.tar.gz tar -zxvf...
877 days ago
Command line to print disk usage on Linux terminal !
#Print disk usage - perl du -h |perl -e'%h=map{/.\s/;99**(ord$&&7)-$`,$_}`du -h`;die@h{sort%h}' #Bash du -k * | sort -nr | cut -f2 | xargs -d '\n' du -sh #Base du -scBM | sort -n #More du -s * | sort -rn | cut -f2- | xargs -d "\n" du -sh868 days ago
- (base) [me@hn1 ME]$ conda update conda Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment loc...
838 days ago
