Python script to check sequence length in multifasta file
#!/usr/bin/python from Bio import SeqIO import sys cmdargs = str(sys.argv) for seq_record in SeqIO.parse(str(sys.argv[1]), "fasta"): output_line = '%s\t%i' % \ (seq_record.id, len(seq_record)) print(output_line)1267 days ago
1267 days ago
Install SibeliaZ in your Linux cluster !
(jitenv) jitendra@Bathymodiolus:~$ conda install -c bioconda sibeliaz Collecting package metadata (current_repodata.json): done Solving environment: failed with initia...1284 days ago
1268 days ago
1268 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1268 days ago
1267 days ago
1267 days ago
1267 days ago
1267 days ago