Results for "Open Source Codes"
Bio-Scripts
blastpgp arguments: -d Database [String] default = nr -i Query File [File In...ult = 0 -F Filter query sequence with SEG [String] default = F -G Cost to open...1002 days ago
Inreractive SCP / File transfer !
#!/bin/bash #next line prints hearer of script echo "Interactive Script to Copy File (files) / Directory using sc...ter, and stores entered value to variable with name filename read -p "Path to sourc...1002 days ago
Perl onliner to check the ids in two files !
perl -lane 'BEGIN{open(A,"ids2.txt"); while(){chomp; $k{$_}++}} if (defined($k{$F[0]})) {print "$_\t$F[0]\t1"} else {print "$_\tNA\t0"}; ' ids1.txt > aaa.xls979 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ c...################### | 100% _openmp_mutex-4.5 | 22 KB |...################## | 100% pyopenssl-21.0.0 | 48 KB | #...########### | 100% font-ttf-source-code | 684 KB | ##########...################# | 100% libopenb...975 days ago
Perl script to rename the fasta file !
#Script #1 #!/usr/bin/perl -w use strict; #USAGE #perl extractPattern.pl kmerfasta > uniref100_result_broad my %kHash; local $/ = '>'; my $infile2 = "$ARGV[0]"; # Kmer fasta open( FH2, '910 days ago
- (abhiENV) [abhi@hn1 output_OM824]$ conda create -n mgsc python=3...-----|----------------- _openmp_mutex-4.5 |...7_1 474 KB intel-openmp-2022.0.1 | h06a4308...4::_libgcc_mutex-0.1-main _openmp_mutex pkgs/main/linux-64...base-1.19.2-py36hfa32c7d_0 opens...
877 days ago
- #R is a feature rich interpretive programming language originally released in 1995. It is heavily used in the bioin...etup. If we were to install R, we first would need to download and extract the sourc...
875 days ago
- #GATK is a toolkit developed by the broad institute focused primarily on...riant discovery and genotyping. It is open source, hosted on github, and availa...virtual environment with the command source activate, we can then run the...e virtual environment run the command sourc...
864 days ago
Bash script to transfer files to server !
# rsync options source destination rsync -azvh --progress PacBio_clean.fa xxx@xxx.xxx.res.in:/home/ # scp source_file_name username@destination_host:destination_folder scp –rpv /datafile xxx@192.168.1.100:/home/me855 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data470 days ago
