Results for "UP"
Bio-Scripts
Sequence Ids conversion files !
...p://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2pubmed.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene2refseq.gz ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/gene_group.gz ftp://ftp.ncbi.nlm.nih.go...1454 days ago
Perl One-Liner to print only non-uppercase letters
#Go through file and only print words that do not have any uppercase letters. perl -ne 'print unless m/[A-Z]/' dna.fa > dnaOnlyLowercase.fa #To lowercase everything perl -pne 'tr/[A-Z]/[a-z]/' dnaUpperCase.fa >dnawithoutuppercase.fa;1435 days ago
Bash script to handle Multifasta files
#Convert all lowercase residues to uppercase in a FASTA sequence file $ awk 'BEGIN{FS=" "}{if(!/>/){print toupper($0)}else{print $1}}' input...1409 days ago
Install SibeliaZ in your Linux cluster !
...environment location: /home/jitendra/.conda/envs/jitenv added / updated specs: - sibeliaz...onda/linux-64::twopaco-0.9.4-he1b5a44_0 The following packages will be UPDATED: ca-certificates...1284 days ago
- JitMeta (base) ➜ JitMeta conda create --name JitMetaENV Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1269 days ago
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1269 days ago
- (JitMetaENV) ➜ JitMeta conda install -c bioconda fastqc Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1268 days ago
Install trimmomatic using conda !
(JitMetaENV) ➜ fastQC_out conda install -c bioconda trimmomatic Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1268 days ago
- (JitMetaENV) ➜ fastQC_out conda install -c bioconda spades Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1268 days ago
Install assembly-stats with conda !
(JitMetaENV) ➜ META_PE conda install -c bioconda assembly-stats Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1268 days ago
