Results for "Meta-pipeline"
Bio-Scripts
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage code use Getopt::Long qw(:config auto_version auto_help...2359 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package metadata (repodata.json): done Solving environment: done ## Pac...1504 days ago
Mapping with BWA-mem or BWA-sampe in one go with python script !
BAM files and mapping BESST requires sorted and indexed BAM files as input. Any read aligner + samtools can be used to obtain such files. Read pairs needs to be aligned i...2175 days ago
- set -e echo "Running reapr version 1.0.18 pipeline:" echo "/home/urbe/Tools/Reapr_1.0.18/reapr WadinetaGapFilled.gapfilled.iteration1.fa out.smaltmap.bam out.pipeline pe...
2150 days ago
Pack a perl program with their dependencies on Ubuntu !
#Follow steps to create your own executable ./web jit@jit-HP-Pro-3335-MT:~/Downloads/autoConTAMPR/bin$ sudo apt install libpar-packer-perl Reading package lists... Don...1562 days ago
- (JitMetaENV) ➜ test_phase_assebly conda install -c bioconda bwise Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan...
1041 days ago
Installing Covid19 Environment !
(base) vikas@vikas-Lenovo-ideapad-320-15ISK:~/vinodLab/Genepi$ conda env create -f covid19-environment.yml Collecting package metadata (repodata.json): done Solving envi...974 days ago
Installing manadatory software for websites hosting !
#See all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update s...967 days ago
Installing manadatory software for websites hosting !
#See all the installed apt list --installed apt list #Installing Apache #To install Apache, install the latest meta-package apache2 by running: sudo apt update s...967 days ago
