Results for "Threshold"
Blogs
BBTools for bioinformatician !
...ut substantially worse. Therefore, I made a different version of it, BBMapSkimmer, which is designed to find all of the mappings above a certain threshold. The shellscript is bbmapskim...2298 days ago
Basic command-line to run BLAST
...rop_gap_final float_value] [-searchsp int_value] [-sum_stats bool_value] [-seg SEG_options] [-soft_masking soft_masking] [-matrix matrix_name] [-threshold float_value] [-culling_limit...2271 days ago
Bookmarks
mrFAST: Micro Read Fast Alignment Search Tool
...special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with respect to user defined error threshold, including indels up to 4+4 b...2959 days ago
- ...ssue specific regulatory component of a set of EWAS DMPs. eFORGE analysis takes a set of DMPs, such as those hits above genome-wide significance threshold in an EWAS study, and analyse...
2773 days ago
- +6 more Bookmarks
Top-level pages
- ...://www.maths.tcd.ie/~lily/pres2/sld009.htm•http://bioweb.ncsa.uiuc.edu/~workshop/Lab_3/Smith-Waterman.htm•http://www.tigem.it/LOCAL/SW/threshold.html•http://sgbcd.weizma...
3974 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...application, characterizes SNPs located in vicinity of SNP of interest; Input: enter SNP ID (rsID), choose population, region, measure for LD, threshold plot format, color of SNPs, a...2936 days ago
- +2 more Top-level pages
Wire posts
Bio-Scripts
Create genome scaffolding with Perl
...l_scaffold_", # prefix for contig names "pid" => 90, # percent ID threshold "trimlimit" => 50, # max...od likelihood that this will work ## i.e. trimLength * (1-%id) < threshold my $trimTotal = ($preTri...2336 days ago
Perl script to remove fasta sequences in multifasta file with certain length threshold
#!/usr/bin/perl use strict; use warnings; my $minlen = shift or die "Error: `minlen` parameter not provided\n"; { local $/=">"; while() { chomp...2278 days ago
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Comments
Comment on "Basic command-line to run BLAST"
...parameters: BLAST has many different parameters that can be adjusted to customize the search. The most important parameters include the e-value threshold, the word size, and the gap p...451 days ago
- ...e ignored --noSplit disable splitting of input sequences during mapping [enabled by default] --perc_identity <value>, --pi <value> threshold for identity [default : 85]...
2150 days ago
- +3 more Comments
