Results for "java"
Bio-Scripts
...nityrnaseq/trinityrnaseq/releases Monday, July 9, 2018: 10:35:42 CMD: java -Xmx64m -XX:ParallelGCThreads...il/support_scripts/ExitTester.jar 0 Monday, July 9, 2018: 10:35:42 CMD: java -Xmx64m -XX:ParallelGCThreads...2171 days ago
- ...specified to output the generated command line without running it --java-options 'OPTION1[ OPTION2=Y ....optional - pass the given string of options to the java JVM at runtime....
2119 days ago
Installing pb-assembly on Linux !
....4.0 Tcl/8.6.7-GCCcore-6.4.0 Java/1.7.0_21...Theano/0.5.0-goolf-1.4.10-Python-2.7.3 Java/1.8.0_152...2078 days ago
CollectGcBiasMetrics.jar will generate a GC bias plot for each contig
...ped.sorted.bam | awk -F"\t" '/@SQ/{gsub("^SN:","",$2);print $2}' ); do samtools view -b aln-pe.mapped.sorted.bam $i > aln-pe.mapped.sorted.$i.bam; java -Xmx2g -jar $(which CollectGc...2048 days ago
- jit@jit-HP-Pro-3335-MT:~$ java -version openjdk version "11.0.6" 2020-01-14 OpenJDK Runtime Environment (build 11.0.6+10-post-Ubuntu-1ubuntu118.04.1) OpenJDK 64-Bit Server VM (b...
1584 days ago
picard tools command to get some insert statistics
#picard tools to get some insert statistics to see whether our reads seem to be in the correct place #module load picard/2.0.1 java -Xmx16g -XX:PermSize=8g -jar $PICARD_HOME/pica...1381 days ago
Commandline for paired end reads simulation with BBMap !
...e/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved reads=100k length=250 mininsert=400 maxinsert=600 gaussian java -ea -Xmx162129m -cp /home/urb...1034 days ago
Tadpole is 250x faster than SPADes assembler !
...around the read merge junctions. If it appears that the merge created new errors, undo it. Java Parameters: -Xmx This will be passed to Java to set memory usage, overridi...1020 days ago
- # Make sure that Java v8+ is installed: java -version # Install Nextflow curl -fsSL get.nextflow.io | bash # Add Nextflow binary to your PATH: mv nextflow ~/bin/ # OR system-wide installation: # sudo mv nextflow /usr/local/bin
1007 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing d...file into our ~/workspace/bin. As with the other java programs which have already b...stalled in this section we can invoke Varscan via java -jar. # Install Varscan c...868 days ago
