Results for "load"
Bio-Scripts
Python script to download covid genome !
...ey require you to sign up import requests import yaml seqs = yaml.load(requests.get("https://www.ncb...x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna = Entrez.ef...1180 days ago
A multilayer perceptron (MLP) neural network in Perl
...*************** #============================================================== sub main { # initiate the weights initWeights(); # load in the data initData();...2960 days ago
Plot the density of genes in R
#column1 = chromosome name and column2 = start position of the gene # check if ggplot2 is installed, if so, load it, # if not, install and load it if("ggplot2" %in% rownames(installed.packages...2328 days ago
- # Count k-mer occurrence using Jellyfish 2.2.6 jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? sread_1.fastq sread_2.fastq # points for a histogram jellyfish histo -o 19mer_out.histo 19mer_out #Plot results using R ##load the data into dataframe19 dataframe19
2308 days ago
Estimate Genome Size with Jellyfish and R
jellyfish count -t 8 -C -m 19 -s 5G -o 19mer_out --min-qual-char=? /common/Tutorial/Genome_estimation/sample_read_1.fastq /common/Tutorial/Genome_estimation/sample_rea...2290 days ago
Installing Busco version 4.0.6
...o=4.0.6 The following packages will be downloaded: package...6115d3f_1 24 KB conda-forge r-pkgload-1.0.2 | r36h0357c0...dule-corelist-5.20190524-pl526_0 perl-module-load bioconda/linux-64::perl-mod...1497 days ago
Perl script to find coding regions in DNA sequences
...pl: the file $filecodontable can not be opened\n"; exit(1); } # load the frequencies of codon usag...mal number ($codon,$freq) = ($line =~ m/(\w+) (\d+\.\d+)/); # load the hash table $pcodons{$co...2199 days ago
Install Parrot Virtual Machine !
...jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ tar -zxvf parr...jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ perl Configure....done. init::hints - Load platform and local hints file...jit@jit-HP-Pro-3335-MT:~/Downloads/parrot-8.1.0$ make jit@ji...1581 days ago
Installing pb-assembly on Linux !
...M4/1.4.18-GCCcore-6.3.0 flex/2.6.3-GCCcore-6.3.0 help2man/1.47.4-GCCcore-6.3.0 numactl/2.0.11-GCC-6.3.0-2.27 [jnarayan@hmem00 ~]$ module load Anaconda3/4.4.0 [jnarayan@...2078 days ago
- # $1 = vcf file # $2 = input bam file # $3 = output QV file module load samtools NUM_BP=`samtools depth $2 | perl -e '$c = 0; while(){chomp; @s = split(/\t/); if(scalar(@s) >...
1648 days ago
