Comment on "Tools for Differential expression analysis"
...is of RNA-Seq data. It uses a generalized linear model to model...and testing for differential expression. limma: A popular R packa...s a linear model to model the gene expression data and provides methods...and testing for differential expression. DEGSeq: This R package i...461 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Genome synteny analysis is the comparison of the genomic structure and gene content of two or more related species. Here are some general steps to follow for conduc...se, such as NCBI or Ensembl. Gene annotation: Annotate the gene...nder or OrthoMCL. Orthologous genes are genes that are homologou...463 days ago
Comment on "Coronavirus Resources !"
Gene and protein expression data of human genes implicated in the virus infection of the host cells. Identifying cell types and genes with highest expression in SARS-CoV-2 infections. https://www.covid19dataportal.org/expression?db=expression1463 days ago
Comment on "Running Trinity on RNA-seq !"
Once your assembly is complete, there are several analyses you will likely want to pu...ies might include: Quantifying transcript and gene abundance. This is a prerequi...der using the Trinity transcriptome assemblies for gene struct...2163 days ago
Comment on "Five unique traits of effective computational biologist"
Corpas M, Fatumo S, Schneider R. (2012) How not to be a bioinformatician. Source Code Biol Med. 7(1):3...Bioinform.14(5):528-37. [link] Slonim DK, Yanai I (2009) Getting Started in Gene Expres...3869 days ago