Comment on "Tools for Searching Repeats And Palindromic Sequences"
I wrote a tools "Palindromer" to find palindromes in whole genome sequences. You can try https://github.com/jnarayan81/Palindromer . I am happy to improve it, if any features are requested.2072 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
It is recommended to used genomes (N50 > 1Mb) for synteny analysis https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2026-42072 days ago
Comment on "R and Bioconductor Tutorial"
R graphics https://bioconductor.org/packages/devel/bioc/vignettes/chromPlot/inst/doc/chromPlot.pdf #chromPlot2072 days ago
Comment on "Long read assembly workshop !"
Long reads base bacterial genome assembly https://inf-biox121.readthedocs.io/en/2016/Assembly/practicals/07_Assembly_using_minasm+racon.html2097 days ago
Comment on "Generates a genome coverage plot with R"
Tutorial at https://bioconductor.org/packages/devel/bioc/vignettes/CoverageView/inst/doc/CoverageView.pdf2114 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs at https://sjobs.brassring.com/TGnewUI/Search/home/HomeWithPreLoad?PageType=JobDe...ZT0d0Nzazx8rXYRnuR5SH23w5KmovvYWxPXFqWdxNit0hvxthQzWVuMHZXwxTHFR%2FPr47VA7Ra0oPN4ypOkwYhs3y5zH57EjP6RkxSuG...2115 days ago
Comment on "Indexcov: fast coverage quality control for whole-genome sequencing"
...gt; 1.0.2p-h470a237_0 conda-forge Proceed ([y]/n)? Y Downloading and Extracting Packagesca-certificates-...####################################################### | 100% Preparing transaction: doneVerifying transa...2134 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
...nary mode; obtained with cat left_reads.fa >short_reads.fa and then cat right_reads.fa >>short_reads.fa). Using AlignGraph runHALC.py long_reads.fa c...2150 days ago
2157 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence bwa mem -x ont2d -t 8 draf...eads.sorted.bam python nanopolish_makerange.py draft.fa | parallel --r...1} -r reads.fa -b reads.sorted.bam -g draft.fa -t 4 --min-candidate-fre...2158 days ago