Comment on "Want to Know which genome assembler rule the world ?"
Genome assembly tools at https://bioinformaticsonline.com/search?q=assembly&entity_type=object&entity_subtype=bookmarks&offset=0&search_type=entities2107 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in Spain http://genome.crg.es/main/joboffers.php2122 days ago
2141 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence...equency 0.1 nanopolish vcf2fasta -g draft.fa polished.*.vcf > polished_genome.fa2141 days ago
Comment on "Running Trinity on RNA-seq !"
...coding regions using TransDecoder and functionally annotate the transcripts using Trinotate. If your organism has an assembled genome, consider using the Trinity t...2165 days ago
2179 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2209 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we are...2216 days ago
2217 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do n...2217 days ago