How to Prepare your Bioinformatics CV ?
...and layout Always ensure that your CV is laser-printed on white, good quality pape...rs guidance on how to prepare a CV, has been reprinted in the widely read How to d...erally be no more than three pages. Quality of print - The CV should be printed on...3401 days ago
Installing Perl environment on Linux
...p;is a distributed revision control and source code management software which can help you to download files from GitHub server. echo means "print". >> means adding...2349 days ago
Download mutliple fasta file from NCBI in one GO!!
...k given that you already have a list of GIs or accession IDs . Alternatively, use one liner perl script: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' GIs....3938 days ago
Public Databases for Bioinformatics !
...unction x = random.random() time.sleep(x/10) print i, x ofp.write("%i\t...nd(pid) for pid in pids: os.waitpid(pid, 0) ofp.close() print "FINISHED" For use case 1 we...1167 days ago
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Check the Size of a directory & Free disk space.
...uo;command with some flag gives you a better output than the default one. The option '-h' stands for human readable format. Therefore, in order to print the sizes of the files / dire...3730 days ago
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Most Commonly used Awk by Bioinformatician
...> output.txt extract column 2,4,5: awk '{print $2,$4,$5}' input.txt > output.txt awk 'BEGIN{OFS="\t"}{print $2,$4,$5}' input.txt show ro...er in this case): awk '{sub(/test/, "no", $0);print}' input.txt OK now h...3940 days ago
BCIL Bioinformatics BITP Application !!
...the online application before 10th May 2015. After registering the online application you need to take the hard copy of it and send through post. Print out of this application shoul...3334 days ago
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Bioinformatician special skills !!
....)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -ne 'BEGIN{$/=">"}if(/^s*(S+)/){open(F,">$1")||warn"$1 write failed:$!";chomp;print F ">", $_}' There...3924 days ago
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Python script to download covid genome !
...nk/files/ncov-sequences.yaml").text) seqs = seqs['genbank-sequences'] print("got %d sequences" % len(seqs...in x and x['gene-region'] == "complete": nm = x['accession'] print("downloading", nm) dna =...1164 days ago
BioPerl to convert between sequence formats from Fasta to Genbank
...= Bio::SeqIO->newFh('-file' => "$inFile" , '-format' => 'Fasta'); $out = Bio::SeqIO->newFh('-format' => 'Genbank'); print $out $_ while ;...2944 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan it will also print the folder perl is installing...444 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...Verify the installation by running a BioPerl script or entering the following command to check the BioPerl version: perl -MBio::Perl -e 'print "$Bio::Perl::VERSION\n"'...450 days ago