Results for "blastp"
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Basic command-line to run BLAST
...called index files, must be in the same directory as the fasta file. blastp [-h] [-help] [-import_search_...] [-use_sw_tback] [-version] Now we can run the blast job. We will use blastp, which is appropriate for pro...2290 days ago
Bookmarks
BLAST options, setting and defaults
...ation can be found in the BLAST 2.0 Release Notes BLASTNBLASTPBLASTXTBLASTNTBLASTXPSIBLAST...Supported and Suggested Values for Gap Open and Extension in BLASTP, BLASTX, TBLASTN, and TBLASTX...2019 days ago
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...which are called from the NGS reads, and aligns the assembled contigs to the query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose....2732 days ago
Frequent parameters for bioinformatics tools !
...y, 16S) -evalue 1E-10 blastn (MLST) -ungapped -dust no -evalue 1E-20 -word_size 32 -culling_limit 2 -perc_identity 95 blastp (VF) -culling_limit 2 ...1331 days ago
Wire posts
Bio-Scripts
Set up WGD environment using conda !
...Show this message and exit. Commands: dmd All-vs.-all diamond blastp + MCL clustering. kde Fit...distribution. ksd Ks distribution construction. mcl All-vs.-all blastp + MCL clustering. mix Mix...1249 days ago
Comments
Comment on "Basic command-line to run BLAST"
...he BLAST program: BLAST has several different programs that are tailored to different types of queries and databases. The most common programs are blastp, blastn, blastx, tblastn, and...469 days ago
Comment on "Basic command-line to run BLAST"
...6216 sequences in 2.87095 seconds.urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa...in human_protein.fa -dbtype prot urbe@urbo214b[Human_vs_Avaga_protein] blastp -query Adineta_vaga.v2.pep.fa...2290 days ago
