3570 days ago
String graph based genome assembly software and tools !
...d reads. The third phase uses paired end and/or mate pair data to build scaffolds...on of read copy counts, and the improved use of mate pairs and min-cost flow for s...ten collapsed by other assemblers. Its ultimate goal is to find a minimal set...2475 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
...Biology. 7:1-52. 2. Trivers, R. L. 1974 Parent-offspring conflict. American Zoologist. 14(1):249-264. Sexual Selection 1. Zahavi, A. 1975. Mate selection - a selection of a...823 days ago
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2999 days ago
Genome Assembly Tools and Software - PART2 !!
...logenetic tree into account to estimate a possible ordering of the co...hm to assemble transcripts and estimate their expression levels from...e information of paired-end and/or matepair data, SSPACE is able to a...rs to clean sequence data from automated DNA sequencers prior to sequ...2832 days ago
3015 days ago
Genome Assembly Tools and Software - PART1 !!
...ems in functional genomics. Rnnotator is an automated software pipeline that gener...om metagenomic data FGAP 1.8.1 – Automated Gap Closing tool FGAP aim...ed with several special algorithms.MAP uses the mate pair information, resulting i...2832 days ago
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Comment on "RACA: Reference-Assisted Chromosome Assembly"
...hromosomes from genome contigs or scaffolds using their alignments to a reference genome of a closely related species. Chromosomer does not require mate-pair libraries and it offers...2917 days ago
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