Comment on "Installing BLAT on Linux !"
Get the code. The best way to do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or,...file: rsync -azvP rsync://hgdownload.soe.ucsc.edu/genome/admin/jksrc.zip ./ or: wget...1253 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://pubmed.ncbi.nlm.nih.gov/32463100/1287 days ago
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command....can always add gunzip to the pipe if needed). The reference genome index filename is given by th...1326 days ago
Comment on "Sibelia: A comparative genomics tool"
Basic usage =========== In this...analysis of distantly-related genomes. However, usage of this set...t shown on these diagrams. Genomes from the "examples/Sibelia"...f the same synteny block. Genomes permutations --------------...ption assumes that all input genomes contain single chromosome....1328 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/inst... mugsy --directory /data/output --prefix mygenomes genome1.fasta genome2.fasta genome3....prefix of each input filename will be used as the genome name in the output files (eg....1328 days ago
Comment on "SVEngine: Allele Specific and Haplotype Aware Structural Variants Simulator"
Another nice simulation tool https://bioinformaticsonline.com/bookmarks/view/40302/simug-a-general-purpose-genome-simulator1444 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
halSynteny is the latest input in computational synteny halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments https://academic....1473 days ago
Comment on "Coronavirus Resources !"
Genome detective https://www.genomedetective.com/app/typingtool/virus/1502 days ago
1563 days ago
Comment on "China’s BGI says it can sequence a genome for just $100"
https://www.genomeweb.com/sequencing/mgi-unveils-extreme-throughput-sequencing-platform-agbt-enable-100-human-genome#.XlpFW5NKg0o1570 days ago