Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3709 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Most commonly used Unix/Linux command for bioinformatics http://rous.mit.edu/index.php/Unix_commands_applied_to_bioinformatics3724 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A library of efficient bioinformatics algorithms http://www.statistica.unimib.it/~dellavedova/papers/ALiBio-applied-bioinformatics.pdf3731 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Introduction to Genetic Algorithms http://lancet.mit.edu/mbwall/presentations/IntroToGAs/ http://l1apc2.ens.utulsa.edu/~rogerw/cs7623/GA-Tutorial-93.doc3731 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...et of contigs with respect to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram filter. The mapping is visualized in a synten...3735 days ago
Comment on "R and Bioconductor Tutorial"
APE: Analyses of Phylogenetics and Evolution in R language http://bioinformatics.oxfordjournals.org/content/20/2/289.abstract3736 days ago
Comment on "R and Bioconductor Tutorial"
A web application framework for R. http://shiny.rstudio.com/ It turn your analyses into interactive web applications. No HTML, CSS, or JavaScript knowledge required :)3752 days ago
Comment on "R and Bioconductor Tutorial"
Rattle: A Graphical User Interface for Data Mining using R http://rattle.togaware.com/3763 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
You can access the collected papers by exploring the thematic ENCODE threads with topics such as DNA methylation, RNA or machine learning. http://www.nature.com/encode/#/threads3766 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A lecture notes series by Can Alkan and Shatlyk Ashyralyev on Introduction to Bioinformatics Algorithms: A Computational Molecular Biology Approaches can be found at http://www.cs.bilkent.edu.tr/~calkan/teaching/cs481/3768 days ago