Comment on "List of popular bioinformatics software/tools"
TopHat http://tophat.cbcb.umd.edu/manual.shtml is a program that aligns RNA-Seq reads to a genome in order to identify exon-exon splice junctions. It is built on the ultrafast short read mapping program Bowtie.3699 days ago
Comment on "Does anyone have Nanopore latest updates?"
Results from Oxford Nanopore's MinION are promising, but fall short of high expectations. Find more at nature news http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243720 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment o...strings – Reading sequences in R [2] BSGenomes – Reading in complete genomes and BioC annotation data [3]...cklayer – interface to online and other genome browsers. chipseq & ChIP...3721 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the...3725 days ago
Comment on "Does anyone have Nanopore latest updates?"
Recently data from pocket-sized genome sequencer unveiled. Results from Oxford Nanopore's MinION are promising, but fall short of high expectations http://www.nature.com/news/data-from-pocket-sized-genome-sequencer-unveiled-1.147243771 days ago
3860 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full3862 days ago
3869 days ago
Comment on "Five unique traits of effective computational biologist"
Corpas M, Fatumo S, Schneider R. (2012) How not to be a bioinformatician. Sourc...(2013) A 10-step guide to party conversation for bioinformaticians. Genome Biology14:104 [link] Via A,...3880 days ago
3935 days ago