Results for "Pair"
Blogs
Computer simulation of genetic mechanism !!
...R package for the Monte Carlo simulation of sequence evolution http://www.ebi.ac.uk/goldman-srv/phylosim/ pIRS Profile-based Illumina pair-end reads simulator https://c...3154 days ago
String graph based genome assembly software and tools !
...e assembles contigs from the corrected reads. The third phase uses paired end and/or mate pair data to build scaffolds from...verse validation to remove the branches based on read coverage and paired-end information, resulting...2508 days ago
- +1 more Blogs
Bookmarks
- NCBI Remap. This tool is conceptually similar to liftOver in that in manages conversions between a pair of genome assemblies but it uses different methods to achieve these mappings....
3185 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully...lobytes of memory. PEAR evaluates all possible paired-end read overlaps and witho...imized implementation, it can merge millions of paired end reads within a couple o...3130 days ago
- +41 more Bookmarks
Pages
Genome Assembly Tools and Software - PART2 !!
...ly be used to create accurate pairwise SNP phasings.Given a set...rative genome information and paired-end reads. DISCOVAR 51750...o Genome AssemblerPRICE (Paired-Read Iterative Contig Exten...remental introduction of read-pair information into the assembly...2865 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...p?id=software:softwarePhyloSim An R package for the Monte Carlo simulation of sequence evolution http://bit.ly/rlsim-gitpIRS Profile-based Illumina pair-end reads simulator https://c...3917 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Has own data library -- data from NCBI Basepair Offers high quality workfl...APindel Description: detects indels from NGS paired-end sequencing Input: file...profiles, validated by Sanger Sequencng Input:paired-end Illumina reads from 100...3088 days ago
- +5 more Top-level pages
Wire posts
News
The 8000 years old Tibetian gene mutation !!!
...the first to find a genetic cause for the adaptation, a single DNA base pair change that dates back 8,000...ons. About 8,000 years ago, the gene EGLN1 changed by a single DNA base pair. Today, a relatively short ti...3725 days ago
ResearchLabs posts
- ...Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (or read pair analysis) based on abnormally...
3172 days ago
Bio-Scripts
- ...ize scales linearly with sequence length. With default parameters,databases are are roughly 150k per base-pair of sequence....
2872 days ago
- ...metrics about the insert size distribution of a paired-end library. CollectIn...te library complexity from the sequence of read pairs FilterLongReadAlignment...otations not offered by the engine AnnotatePairOrientation...
2255 days ago
- +4 more Bio-Scripts
Comments
- ...r rates, and coverage levels. The wgsim tool is also open-source and available for free download. PIRS: PIRS (short for Profile-based Illumina pair-end Reads Simulator) is a sho...
595 days ago
Comment on "Sibelia: A comparative genomics tool"
...3. Start -- one-based index of the first base pair of the instance 4. End -- one-based index of the last base pair of the instance 5. Length --...uppose that somewhere in the genome exist two pairs of K-mers K1 and K2: 1st...1464 days ago
- +6 more Comments
