ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...a are analyzed in the absence of a reference database (ex: using PEAKS, PepNovo). ProteoClade scales from two organisms to every organism in UniProt. Please refer to the com...1647 days ago
489 days ago
List of bioinformatics open source projects/software.
...for rapid prototyping Bio4j http://bio4j.com/ Bio4j is a bioinformatics platform and graph based database built around most data available in UniProt KB(Swiss-Prot + TrEMBL), Gene...3895 days ago
Apps for Busy Bioinformatics Researchers !!!
...eins on the go. Key features (Also in website): Search proteins by UniProt IDs, gene name or keywords C...nsSNPs in dbSNP and 1000 Genomes collection, as well as variants from UniProt and PMD. SAASs come from >...3680 days ago
Command line to create blast uniref database !
...orted), which is available from the NCBI's FTP site: ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/2.2.26/. wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fast...1089 days ago
Downloading mmseqs databases !
...Aminoacid yes https://www.uniprot.org/help/uniref - UniRef90...Aminoacid yes https://www.uniprot.org/help/uniref - UniRef50...yes https://www.uniprot.org/help/uniprotkb - UniProtKB/TrEMBL Ami...th/swissprot: mmseqs databases UniProtKB/Swiss-Prot outpath/swisspro...1081 days ago
Comment on "Command line to create blast uniref database !"
wget ftp://ftp.uniprot.org/pub/databases/uniprot/uniref/uniref90/uniref90.fasta.gz gunzip -v uniref90.fasta.gz makeblastdb -in uniref90.fasta -dbtype prot -input_type fasta -out uniref90.fasta1084 days ago
Comment on "Coronavirus Resources !"
Curated functional and classification data on the SARS-CoV-2 protein entries and associated protein receptors. https://www.covid19dataportal.org/proteins?db=uniprot-covid191562 days ago