BBTools for bioinformatician !
...igned to find the best mapping, and heuristics will cause it to ignore mappings that are valid but substantia...rent version of it, BBMapSkimmer, which is designed to find all of the mappings above a certain threshold. Th...2297 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
...fic for that location. You can map thousands of genes and can view all mappings easily. Users can investigate the detailed information about the mappings (like gene names or total gen...2167 days ago
3032 days ago
mrFAST: Micro Read Fast Alignment Search Tool
...manual, describes how to choose the parameters and tune mrFAST with respect to the library settings. mrFAST is designed to find 'all' mappings for a given set of reads, how...2958 days ago
Awesome perl frameworks, libraries and software - PART 3
...e autocomplete suggestions based on your data audreyt/encode-hanconvert - [Perl] Modules and scripts for Traditional and Simplified Chinese mappings szabgab/perltv.org - Th...2521 days ago
2896 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly g...2357 days ago
Installing docker for Bioinformatics on Ubuntu !
...r registry logs Fetch the logs of a container pause Pause all processes within one or more containers port List port mappings or a specific mapping for the...1540 days ago
Download minikraken database !
...2 --use-names --threads 4 --db minikraken2_v2_8GB_201904_UPDATE --fastq-input --report evol1 --gzip-compressed --paired ../mappings/evol1.sorted.unmapped.R1.fastq.gz ../mappings/evol1.sorted.unmapped.R2.fast...1241 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...;assembler>_perfect. This should take about a minute. The next tool we need is reapr smaltmap which creates a bam file of read-pair mappings. Do the same thing you did wi...1364 days ago
2149 days ago