Comment on "Basic command-line to run BLAST"
...for matches to those words in the database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of s...463 days ago
Comment on "Basic command-line to run BLAST"
...ng any homology search. BLAST (Basic Local Alignment Search Tool) is a widely used...on about the sequences that matched the query sequence, including the alignment score, identity, and e-value....465 days ago
1188 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
...lines in the FASTA files should not contain ':' or '-' to avoid parsing problems. View or parse MAF output The output of Mugsy is Multiple Alignment Format (MAF).One option for b...1328 days ago
Comment on "Coronavirus Resources !"
UK resource in CoViD19 http://cov-glue.cvr.gla.ac.uk/#/home https://macman123.shinyapps.io/ugi-scov2-alignment-screen/1501 days ago
1562 days ago
Comment on "Long read assembly workshop !"
Bacterial genome assembly tutorial http://evomics.org/learning/assembly-and-alignment/2017-assembly-lab/2082 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...verlapping ratio to cluster two skeletons or alignment records. [0.70] -s --max-skel...ons: -m --match-sc [INT] Match score for SW-alignment. [1] -M --mis-pen [INT] Misma...T] Minimum length of gap that causes a split-alignment. [100] -S --soft-clip Use sof...2165 days ago
2179 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...and used for mapping. Output SAM alignments will be in genome space (not...Assembly format. sam - Sequence Alignment/Mapping format. [auto] -L, --...ich algorithm should be used for alignment. Options are: sg - Myers' bit...- If specified, all (secondary) alignments within (-F FLT) will be outp...2334 days ago