Results for "multiple"
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Comment on "Ancestral sequence reconstruction steps !"
Parallelization of MAFFT for large-scale multiple sequence alignmentshttps://academic.oup.com/bioinformatics/article/34/14/2490/49160992310 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...erence. [0.04] -x --mis-rate [FLOAT] Maximum error rate of mismatch within reads. [0.04] -T --read-type [STR] Specifiy the type of reads and set multiple parameters unless overriden....2312 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...e code below) for analyzing PacBio data. Minimap only accepts two FASTQ files and you need to map your FASTQ file against itself. So, if you have multiple FASTQ sequencing files, you h...2356 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq2442 days ago
- ...sed assembler The last assembler we will run is SPAdes. SPAdes is different from the other assemblers in that it generates a final assembly from multiple kmers. A list of kmers i...
2533 days ago
Comment on "Alignment of closely related whole genomes/scaffolds"
Hmmm great link Rahul, You can also try Mugsy: fast multiple alignment of closely related whole genomes http://bioinformatics.oxfordjournals.org/content/27/3/334 In my works, I have a...3208 days ago
Comment on "Bio++ : C Language libraries for your biological need"
MafFilter is a program to process genome alignment in the Multiple Alignment Format. Current version is 1.1.2 http://biopp.univ-montp2.fr/forge/maffilter3429 days ago
- ...and capabilities. C/C++ editing mode: completion, code navigation, find usages, and automatic indentation. Source editor improvements including multiple cursors, tab re-ordering, and...
3547 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Parallelized pairwise sequence alignment using CUDA on multiple GPUs http://www.biomedcentral.com/1471-2105/10/S7/A33838 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003862 days ago
