Comment on "Run miniasm assembler on nanopore reads !"
...TQ sequencing files, you have to concatenate them into a single file...ava-pb -t 23 \ 20170911_oly_pacbio_cat.fastq \ 20170911_oly_pacbio...f \ /home/data/20170911_oly_pacbio_cat.fastq /home/data/20170911_mi...racon -t 24 \ 20170911_oly_pacbio_cat.fastq \ 20170918_oly_pacbio...2217 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...org/biocLite.R") biocLite("rhdf5") install.packages(c("shiny","bit64","data.table","svDialogs")) q() R may ask if you want to install into a local library, just say Y and acce...2224 days ago
2225 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...f errors) We start with an all against all comparison: minimap -Sw5 -L100 -m0 -t8 reads.fq reads.fq | gzip -1 > reads.paf.gz Then we can assemble miniasm -f rea...2225 days ago
Comment on "BINC (BioInformatics National Certification) Website address"
BINC 2018 http://bioinformaticsonline.com/news/view/36281/binc-bioinformatics-national-certification-examination-20182254 days ago
Comment on "Perl one-liner for bioinformatician !!!"
Convert file to lowercase dd $ dd if=input.txt of=output.txt conv=lcase tr $ tr '[:upper:]' '[:lower:]' < input.txt > output.txt awk $ awk '{ print tolower($0) }' input.txt > output.txt...2264 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
Install cpanm to make installing other modules easier (you'll thank us later). You need to type these commands into a Terminal emulator (Mac OS X, Win32, Linux) cpan App::cpanminus Now install any module you can find. cpanm Module::Name2268 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
...Lollipopshttp://www.ghastlyfop.com/blog/ Macromolecular Modeling Bloghttp://rosettadesigngroup.com/blog/ Nuevo Blog de BioInformatica Ecuadorhttp://bioinformatica-ec.blogspot.com/ Perfect mar...2292 days ago
Comment on "Basic command-line to run BLAST"
...ww.genoscope.cns.fr (www.genoscope.cns.fr)|195.83.221.23|:80... connected.HTTP request sent, awaiting response... 200 OKLength: 11437049 (11M) [application/x-gzip]Saving to: ‘...2294 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Bioinformatics Research and Applications https://link.springer.com/book/10.1007/978-3-642-38036-5 Publish bioinformatics tools2307 days ago