Comment on "Commercial and public next-gen-seq (NGS) software"
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/3694 days ago
Comment on "Which are the best statistical programming languages to study for a bioinformatician?"
...es Yes Nearest Neighbor Yes &nbs...p; Yes Experimental Design Yes Y...nbsp;Yes Signal Processing Yes...3698 days ago
Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3719 days ago
3749 days ago
Comment on "Does anyone have Nanopore latest updates?"
Virus reveals Nanopore mechanism: http://www.nanowerk.com/nanotechnology-news/newsid=36061.php http://www.nature.com/ncomms/2014/140616/ncomms5171/full/ncomms5171.html3752 days ago
Comment on "Does anyone have Nanopore latest updates?"
More data and relevant paper: http://figshare.com/articles/The_second_Oxford_Nanopore_read_ever_published/1060188 http://omicfrontiers.com/category/nanopore http://arxiv.org/abs/1406.42143755 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore reads from MinION Sequencer (Oxford Nanopore) http://figshare.com/articles/A_P_aeruginosa_serotype_defining_single_read_from_our_first_Oxford_Nanopore_run/10529963757 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
...: http://maq.sourceforge.net/maq-man.shtmlSOAP alignment tool: http://soap.genomi.../Bowtie: http://bowtie-bio.sourceforge.net/Novoalign: http://www.novocraft.comBWA...1001genomes.org/downloads/shore.htmlCloudBurst (Highly Sensitive Short Read Mappi...3768 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
R package SPP for chip-seq analysis. It can read quite a few aligner's output file. Here is the original package tutorial. http://compbio.med.harvard.edu/Supplements/ChIP-seq/tutorial.htmlHere is my...3769 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A new trainable, high-speed and biologically relevant alignment algorithms of high-throughput sequencing reads to coding DNA http://nar.oxfordjournals.org/content/early/2014/05/26/nar.gku473.full3775 days ago