Comment on "Next Generation Sequencing (NGS) Tutorials"
Informatics for RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial?1626 days ago
Comment on "Quick tour of Genetic Algorithms !"
Useful links https://towardsdatascience.com/introduction-to-genetic-algorithms-including-example-code-e396e98d8bf3 https://github.com/memento/GeneticAlgorithm1655 days ago
Comment on "Patterns: a modeling tool dedicated to biological network modeling"
https://github.com/fbertran/Patterns1795 days ago
Comment on "Roary: the Pan Genome Pipeline"
Tutorial at http://sepsis-omics.github.io/tutorials/modules/roary/1982 days ago
Comment on "Assembly tutorial PPT"
Genome assembly tutorial https://astrobiomike.github.io/genomics/de_novo_assembly2014 days ago
Comment on "Tools for Searching Repeats And Palindromic Sequences"
I wrote a tools "Palindromer" to find palindromes in whole genome sequences. You can try https://github.com/jnarayan81/Palindromer . I am happy to improve it, if any features are requested.2065 days ago
Comment on "Running Trinity on RNA-seq !"
Once your assembly is complete, there are several analyses you will likely want to pursue to explore aspects of the biology of your organism based on your assembled tra...2175 days ago
2189 days ago
Comment on "poRe: an R package for the visualization and analysis of nanopore sequencing data"
...and back at the Linux command line: R CMD INSTALL poRe_0.16.tar.gz The fastq extraction scripts for poRe are in github, so let’s go get those: git clone https://github.com/mw55309/poRe_scripts.git...2226 days ago
Comment on "Bioinformatics tools developed for Oxford Nanopore data analysis !"
NanoComp: comparing multiple runs NanoStat: statistic summary report of reads or alignments NanoFilt: filtering and trimming of reads NanoLyse: removing contaminant reads (e.g. lambda control DNA) from fastq2305 days ago