Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicates, trimming, string pattern searches [1] Biostrings – Reading sequences in R [2] BSGenomes &...3729 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A library of efficient bioinformatics algorithms http://www.statistica.unimib.it/~dellavedova/papers/ALiBio-applied-bioinformatics.pdf3729 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Algorithms in Bioinformatics http://www.iis.sinica.edu.tw/~hil/bioinfo/3729 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003732 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single refere...eny plot. Find more at http://bibiserv.techfak.uni-bielefeld.de/cg-cat/r2cat.html3733 days ago
Comment on "List of popular bioinformatics software/tools"
Qlucore Omics Explorer is a next-generation bioinformatics software program that delivers immediate results. Combine visualization with powerful statistical methods in the easy to use program to obtain new results faster. http://www.qlucore.com/3740 days ago
Comment on "Encode sequencing data freely available to download and use for academic means"
User can also find some useful ENCODE data at http://www.gencodegenes.org/releases/17.html3740 days ago
Comment on "R and Bioconductor Tutorial"
Little Book of R for Bioinformatics by Avril Coghlan, Wellcome Trust Sanger Institute, Cambridge, U.K. http://a-little-book-of-r-for-bioinformatics.readthedocs.org/en/latest/3741 days ago
Comment on "R and Bioconductor Tutorial"
A web application framework for R. http://shiny.rstudio.com/ It turn your analyses into interactive web applications. No HTML, CSS, or JavaScript knowledge required :)3750 days ago
Comment on "R and Bioconductor Tutorial"
Rattle: A Graphical User Interface for Data Mining using R http://rattle.togaware.com/3760 days ago