Tags: Bioinformatics, Comparative Genomics, Assembly, Jobs
723 days ago
ALE: Assembly Likelihood Estimator
Just import the assembly, bam and ALE scores. You can convert the .ale file to a set of .wig files with ale2wiggle.py and IGV can read those directly. Depending on your genome size you may want to convert the .wig files to the BigWig format.Tags: ALE, Genome, Assembly, Likelihood, Estimator
479 days ago
Tags: Assembly, Genome, Record, pages, redirect, NCBI, Datasets
353 days ago
CLAW: Chloroplast Long-read Assembly Workflow
CLAW (Chloroplast Long-read Assembly Workflow) is an mostly-automated Snakemake-based workflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads, which are baited out of larger read libraries (e.g., an Oxford Nanopore Technologies MinION read library derived from photosynt...Tags: CLAW, Chloroplast, Long-read, Assembly, Workflow
129 days ago
Tags: Proksee, Bacteria, Assembly, Genome
94 days ago
MetaGraph: Ultra Scalable Framework for DNA Search, Alignment, Assembly
The MetaGraph framework is designed to work with a wide range of input data sets, indexing from a few samples up to the contents of entire archives with hundreds of thousands of records. The indexing workflow always follows the same principle, transforming single input samples into error-rem...Tags: MetaGraph, Ultra, Scalable, Framework, DNA, Search, Alignment, Assembly
20 days ago