Results for "Genome"
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Comment on "Want to Know which genome assembler rule the world ?"
Genome assembly tools at https://bioinformaticsonline.com/search?q=assembly&entity_type=object&entity_subtype=bookmarks&offset=0&search_type=entities2827 days ago
Comment on "List of Bioinformatics Vacancy, Jobs, Opportunity websites"
Bioinformatics jobs in Spain http://genome.crg.es/main/joboffers.php2843 days ago
- ...y-prefix> \ -d <assembly-directory> \ genomeSize=<number>[g|m|k] \ [...1 file2 ... example: canu -d run1 -p godzilla genomeSize=1g -nanopore-raw reads/*....ultiple assemblies in the same directory. The genome size should be your best gues...
2862 days ago
Comment on "Nanopolis: polish a genome assembly"
# Index the draft genome bwa index draft.fa # Align the basecalled reads to the draft sequence...equency 0.1 nanopolish vcf2fasta -g draft.fa polished.*.vcf > polished_genome.fa2862 days ago
Comment on "Running Trinity on RNA-seq !"
...coding regions using TransDecoder and functionally annotate the transcripts using Trinotate. If your organism has an assembled genome, consider using the Trinity t...2886 days ago
- ...quencing depth, strand specificity, GC bias, read distribution over the genome structure and coverage unifor...e file (two-column, plain text file). Visualization can be performed by genome browsers like UCSC, IGB and I...
2900 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2930 days ago
Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of RAM, so we are...2937 days ago
- ...at was used to assemble the human genome. It is quite a complex beast...bly-directory> \ genomeSize=<number>[g|m|k] \...<assembly-prefix>. The genome size is your best guess of th...u -p meta \ -d meta \ genomeSize=40m \ useGrid=false...
2938 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy reads, they do n...2938 days ago
