3729 days ago
Comment on "R and Bioconductor Tutorial"
NGS with R ShortRead – Quality assesment of the reads, finding duplicate...and BioC annotation data [3] DEGSeq – Identify differentially expressed g...structure for positional data. biomaRt – interface to BioMart annotations....3730 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
A library of efficient bioinformatics algorithms http://www.statistica.unimib.it/~dellavedova/papers/ALiBio-applied-bioinformatics.pdf3730 days ago
Comment on "Bioinformatics Algorithm Demonstrations and Tutorials"
Introduction to Genetic Algorithms http://lancet.mit.edu/mbwall/presentations/IntroToGAs/ http://l1apc2.ens.utulsa.edu/~rogerw/cs7623/GA-Tutorial-93.doc3730 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
i-ADHoRe is a highly sensitive software tool to detect degenerated homology relations within and between different genomes.3733 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Thanks for such an informative blog. I notice MCScan is missing. MCScan is an algorithm able to scan multiple genomes or subgenomes in order to identify putative homologous chromosomal regions, and align these regions using genes as anchors. More at http://www.ncbi.nlm.nih.gov/pubmed/222176003733 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
r2cat (related reference based contig arrangement tool) can be used to order a set of contigs with respect to a single reference genome. This is done by mapping the contigs onto the reference using a q-gram...3734 days ago
Comment on "R and Bioconductor Tutorial"
R/parallel – speeding up bioinformatics analysis with R http://www.biomedcentral.com/1471-2105/9/3903735 days ago
Comment on "R and Bioconductor Tutorial"
APE: Analyses of Phylogenetics and Evolution in R language http://bioinformatics.oxfordjournals.org/content/20/2/289.abstract3735 days ago
Comment on "R and Bioconductor Tutorial"
A web application framework for R. http://shiny.rstudio.com/ It turn your analyses into interactive web applications. No HTML, CSS, or JavaScript knowledge required :)3751 days ago