OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...dies have demonstrated both algorithms to produce near identical reciprocal similarities. Details of the OrthoANI algorithm is given in (Lee et al. 2015). OAT employs an easy-to-foll...1971 days ago
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Best Practices for Variant Calling with the GATK
The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad’s Genome...1534 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
...plot, boxplot, heatmap, …).The bioinformatics treatment is based on Vsearch [Rognes 2016] which showed to be both accurate and fast [Wescott 2015].The statistical analysis is...1357 days ago
Calling variants in non-diploid systems
...ough the same approaches will work equally good on viral and bacterial genomes (Rebolledo-Jaramillo et al. 2014, Li et al. 2015).1043 days ago