Results for "454 data"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
As a bioinformatics programmer, and crunchy data analyser you need to install several perl mo..."yum" for the rescue. Dont worry biological data cruncher, this is true we are...nning (atstart or never)? [atstart]Cache metadata (yes/no)? [yes]Policy on buil...3949 days ago
Five unique traits of effective computational biologist
Bioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biological data. Being a great biological pro...3949 days ago
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Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3944 days ago
- Bioinformatics is developing very rapidly. With new tool...now a days, easy to analyse the large scale genomics datasets. But we need to understan...he background of software/tool to better explain the data computationally. I fou...
3944 days ago
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Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and...3951 days ago
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of struct...tire topology for 77% of the sequences in a standard dataset of 86 proteins with superv...Matlab Conclusion/Implementation: Here discriminant data mining approach was used to p...3944 days ago
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Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways&n...est to Bio-informatics work that is math heavy and deals with a large amount of data.3951 days ago
- The key to finding a solution is to notice that most&nbs...is increasing rapidly, but the actual amount of new data is very small. In other words...ipedia.org/wiki/Compression_of_Genomic_Re-Sequencing_Data http://www.nature.com/nbt/jo...
3919 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never at...Access), allowing you to fetch public databases like GenBank, EMBL or Sw...ogenetics and molecular evolution Data structure and IO Phylogeneti...rks with Function objects).Statistics: DataTable object, with I/O from CS...3946 days ago
- I found several useful bioinformatics arti...uates. Elementary Sequence Analysis - Database Searching by B. Gold...ision. Protein Sequence Alignment and Database Scanning Geoff Barto...sp;Bio-IT World , Dec. 10, 2002. Data stored in multiplying bacteri...
3920 days ago
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Top-level pages
- ...f large amounts of biological data, using networks of computers and databases." - from the glossary fo...g biological laws solely from data analysis by induction (e.g. A...ctures are stored in specific databases (for example, the Protei...sis of structural and genomic data will certainly get more impor...
3946 days ago
- ...ictive information from large databases. Data mining is becoming an increas...n answer. This is exploratory data analysis, one of the most dif...ustrating positions to be in. Data mining is a huge field and ca...covering hidden value in your data warehouse:http://www.thearlin...
3945 days ago
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Wire posts
News
- InterpretOmics, a big data analytics startup that focuses on life sciences, has received angel funding of around Rs 10 crore from a group of investors including Singapore's information technology and shipping company, Amarante. http://www.interpretomics.co/
3919 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of experimental data. This allows us to draw infor...3939 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosyste...alyze Next Generation Sequencing (NGS) data analysis. In the context of a...order to ensure compliance of produced datasets with pipelines requiremen...tional facilities and expertise in NGS data analysis, and will benefit as...3947 days ago
- van Noort Group is looking for PhD fellows...hnologies produce large amounts of raw data that can be transformed into...from the growing amount of biological data becoming available and turn b...re based on a combination of published data. An important part of the gen...
3947 days ago
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ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as...ding in human disease. Research Area: Analysis of Next Generation sequence data in cancer Methods for analys...
3947 days ago
- Statistical functional genomics in experimental medicine The genome projects and t...cal and biological backgrounds. Research Area: Linear models for microarray data Digital gene expression tech...
3947 days ago
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Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood m...r Gene se Genome tak. Maine BLAST kiya. NCBI wale Data le jayenge Raju ban ga...T To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Database Search Kare Bioinformati...3917 days ago
The Best Bioinformatics / Computational Biology Quotes
Bioinformatician are not anti-social; We are just genome friendly. Bioinformatic...omes. I'm BioGeek. Fedup with LIPS, try God script. Idiot, Go ahead, make my data! Thank god, my genome just c...3719 days ago
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Video
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense out of Massive Data Air date: Wednesday...ial increase in genomic and biomedical data, which will soon outstrip adv...racting new science from these massive datasets will require not only fas...3901 days ago
Bioinformatics -- Understanding of living systems through information science
Recently, the progress of the Human Genome Project, aiming to decode all human DNA...r to certain lifestyle-related diseases, by understanding their personal genome data. So, I think it's amply possi...3916 days ago
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Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1216 days ago
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences...ead().split("\n")[1:] allseq[nm] = ''.join(dna) import json with open("data/allseq.json", "w") as f: j...1135 days ago
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Polls
Which of the followings are the best place to study Bioinformatics ?
Bioinformatics is a major growth area and qualified Bioi...cians are in high demand. An explosion in biological data has resulted from genome proj...atics provides the tools to analyse and exploit such data sets.Can you please suggest m...3415 days ago
At what age did you gain passion in Bioinformatics?
Most of the bioinformatician were biologist ( yeah ... not all ;), and at later stage they gain a passion in Bioinformatics and learn it. When did you get inclined towards computational analysis of biological data?3238 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics...ating the globally produced biological data to derivate unified solutions...arison of high-throughput experimental data in an integrated manner and b...im? With the increasing amount of data in databases, there is alread...2361 days ago
Groups
BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and s...3902 days ago
R is a free software programming language and a...uage is widely used among statisticians and data miners for developing statistical software and data analysis. R's popularity has...nd comprehension of high-throughput genomic data. Bioconductor uses the R stat...3950 days ago
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Tags
Structure of Binary files used for storing sequencing data-bam and sff
Many times bioinformatician needs to parse binary files like bam and sff. Advantage of binary files is that they occupy less space in memory with maximum information content. Link for those who looking for structure of Bam and sff file: Bam: http://samtools.sourceforge.net/SAMv1.pdf (from...Tags: bam, sff, sam, iontorrent data, 454 data, pyrosequencing data, hxd, hexadecimal, binary files, sequencing
3919 days ago
Comments
- ...etic reads based on sequencing technologies such as Illumina, SOLiD, and 454. It is a versatile tool that...simulator that can generate synthetic reads from whole genome sequencing data. It is designed to simulate r...
414 days ago
- ...ated using Illumina and Roche 454 platforms with detailed result...It is particular designed for 454/Roche data, but can also be us...t generation sequencing (NGS) data, consisting of both raw reads...also supports Ion Torrent and 454 data. Trim galore! Trim_galo...
2136 days ago
