Results for "AI"
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YASS :: genomic similarity search tool
...nucleic (DNA/RNA) sequences in fasta or plain text format (it produces local pairwise alignments). Like most o...search tool uses multiple transition constrained spaced seeds that enable t...tep (as provided for example by iedera). Main features of YASS are: mul...2939 days ago
Painless package development for R
Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package d...2938 days ago
- ...adapter sequences, primers, poly-A tails and other types of unwanted...Reads from small-RNA sequencing contain the 3’ sequencing adap...art with a primer sequence. Poly-A tails are useful for pulling out...n IUPAC wildcard characters. Also, paired-end reads and even colorsp...
2928 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...ute's web site. An incomplete list of questions and answers (yes, these have really been asked by our users! Please feel free to add your own by e-mailing us) is here. If you use...2928 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2918 days ago
Hagfish - assess an assembly through creative use of coverage plots
...ng (NGS) experiments. Hagfish builds on the concept of coverage plots and aims to assist (amongst others)...sequencing experiment. Hagfish requires a reference sequence and a paired end re-sequencing dat...2921 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-sourc...iquely among current mapping tools, MOSAIK can align reads generated by...d Pacific BioSciences SMRT. Indeed, MOSAIK was the only aligner to prov...provide highly accurate alignments, MOSAIK employs a hash clustering st...2921 days ago
- gkno opens the world of complex bioinformatic analysis to people of all level of computational expertise. This site contains documentation, tutorials and information on all the tools that comprise gkno. http://gkno.me/how-to/install.html http://gkno.me/software.html
2921 days ago
- ...'s recommended for most workflows, including those for genomic resequencing, RNA-Seq and Chip-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative...
2921 days ago
- Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of Apps are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
2918 days ago
