Tools for bacterial whole genome annotation
...SEED database and provides detailed annotation and pathway ana...al databases and is not currently available for download or use outs...with unknown functions. BEACON is available under GNU General Public...overhead of a database. MAKER is available for download and can be...2332 days ago
Run miniasm assembler on nanopore reads !
...nd outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm do...s the per-base error rate is similar to the raw input reads. Find the detail of the reads repeats: fq2...2331 days ago
Bioinformatics Web Application Development with Perl
...and easier to use every year, the available libraries are wonderful...nd the inventions and discoveries available in modern Perl are unsur...top Perl web frameworks, yet it retains its flexibility and vibranc...ness models instead of the small details of how a relational databas...2322 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...h ordinary mapping. If a genome (say, human) contains an exact repeat somewhere,...ing references indexed with BBSplit, as they contain additional information regar...in a special "ambiguous" file for each of them. Paired reads will always be kept...2315 days ago
2306 days ago
PerlOneLiner for Bioinformatician
...time @now' # Prepend timestamps to stdout (GMT, localtime)tail -f logfile | perl -ne 'print scalar gmtime," ",$_'tail -f logfile | perl -ne 'print...lineperl -ple 's/^[ \t]+//'perl -ple 's/^\s+//' # Strip trailing whitespace (space, tabs)...2303 days ago
List of visualization tools for network biology
...which makes it possible to infer details about the network as a whol...s http://www.zbi.uni-saarland.de/chair/projects/BioMiner Cell Illu...tion techniques, data models and domain-specific visualizations htt...nge over time or space http://www.sailing.cs.cmu.edu/main/?page_id=...2289 days ago
List of visualization tools for genome alignments
...with annotation information of a reference genome http://bioinformatics.zj.cn/magicviewer/ MapView Alignments of huge-scale single-end and pair-end short reads http://omic...2285 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...n head file — output the first 10 lines of file tail file — output the last 10 lines of file tail -f file — output...ing host — ping host and output results whois domain — get information...2281 days ago
Awk for Bioinformatician and computational biologist
...allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more files to see if they contain lines that match with the sp...2280 days ago